1WR6 Protein Transport Signaling Protein date Oct 12, 2004
title Crystal Structure Of Gga3 Gat Domain In Complex With Ubiquitin
authors M.Kawasaki, T.Shiba, Y.Shiba, Y.Yamaguchi, N.Matsugaki, N.Igarashi, M.Suzuki, R.Kato, K.Kato, K.Nakayama, S.Wakatsuki
compound source
Molecule: Adp-Ribosylation Factor Binding Protein Gga3
Chain: A, B, C, D
Fragment: C-Gat Domain(Residues 209-319)
Synonym: Golgi-Localized, Gamma Ear-Containing, Arf- Binding Protein 3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dl41
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-2

Molecule: Ubiquitin
Chain: E, F, G, H

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Cell: Red Blood Cells
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.290
length a length b length c angle alpha angle beta angle gamma
56.026 113.628 114.703 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand MSE enzyme
A, D, C, B

Primary referenceMolecular mechanism of ubiquitin recognition by GGA3 GAT domain., Kawasaki M, Shiba T, Shiba Y, Yamaguchi Y, Matsugaki N, Igarashi N, Suzuki M, Kato R, Kato K, Nakayama K, Wakatsuki S, Genes Cells. 2005 Jul;10(7):639-54. PMID:15966896
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (1wr6.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (1wr6.pdb2.gz) 29 Kb
  • Biological Unit Coordinates (1wr6.pdb3.gz) 28 Kb
  • Biological Unit Coordinates (1wr6.pdb4.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 1WR6
  • CSU: Contacts of Structural Units for 1WR6
  • Likely Quarternary Molecular Structure file(s) for 1WR6
  • Structure Factors (182 Kb)
  • Retrieve 1WR6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WR6 from S2C, [Save to disk]
  • Re-refined 1wr6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WR6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WR6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WR6, from MSDmotif at EBI
  • Fold representative 1wr6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wr6_D] [1wr6_F] [1wr6_E] [1wr6_H] [1wr6_A] [1wr6_G] [1wr6_C] [1wr6_B] [1wr6]
  • SWISS-PROT database: [Q9NZ52] [P62990]
  • Domain organization of [GGA3_HUMAN] [UBIQ_BOVIN] by SWISSPFAM
  • Domain found in 1WR6: [UBQ ] by SMART
  • Other resources with information on 1WR6
  • Community annotation for 1WR6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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