1WT5 Immune System date Nov 16, 2004
title The Crystal Structure Of A Humanized Antibody Fv 528
authors K.Makabe, K.Tsumoto, R.Asano, H.Kondo, I.Kumagai
compound source
Molecule: Anti Egfr Antibody Fv Region
Chain: A, B
Fragment: Vh Fragment
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Anti Egfr Antibody Fv Region
Chain: C, D
Fragment: Vl Fragment
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 65
R_factor 0.273 R_Free 0.301
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.282 63.282 225.339 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
related structures by homologous chain: 1A4J, 1I8M, 1JV5, 1UB6
Primary referenceThermodynamic consequences of mutations in Vernier zone residues of a humanized anti-human epidermal growth factor receptor (EGFR) murine antibody, 528., Makabe K, Nakanishi T, Tsumoto K, Tanaka Y, Kondo H, Umetsu M, Sone Y, Asano R, Kumagai I, J Biol Chem. 2007 Oct 17;. PMID:17947238
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (1wt5.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (1wt5.pdb2.gz) 38 Kb
  • Biological Unit Coordinates (1wt5.pdb3.gz) 39 Kb
  • CSU: Contacts of Structural Units for 1WT5
  • Likely Quarternary Molecular Structure file(s) for 1WT5
  • Structure Factors (234 Kb)
  • Retrieve 1WT5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WT5 from S2C, [Save to disk]
  • Re-refined 1wt5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WT5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WT5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WT5, from MSDmotif at EBI
  • Fold representative 1wt5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wt5_A] [1wt5_C] [1wt5] [1wt5_D] [1wt5_B]
  • SWISS-PROT database: [P23083]
  • Domain organization of [HV103_HUMAN] by SWISSPFAM
  • Domain found in 1WT5: [IGv ] by SMART
  • Other resources with information on 1WT5
  • Community annotation for 1WT5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science