1WWY Apoptosis date Jan 18, 2005
title Solution Structure Of The Duf1000 Domain Of A Thioredoxin-Li
authors A.K.Goroncy, T.Kigawa, S.Koshiba, N.Kobayashi, N.Tochio, M.Inoue, S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Thioredoxin-Like Protein 1
Chain: A
Fragment: Duf1000 Domain
Synonym: 32 Kda Thioredoxin-Related Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Txnl1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040621-12
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Primary referenceSolution structure of the C-terminal DUF1000 domain of the human thioredoxin-like 1 protein., Goroncy AK, Koshiba S, Tochio N, Tomizawa T, Inoue M, Tanaka A, Sugano S, Kigawa T, Yokoyama S, Proteins. 2010 Jul;78(9):2176-80. PMID:20455272
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (869 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1WWY
  • Original NMR restraints for 1WWY from PDB
  • Retrieve 1WWY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WWY from S2C, [Save to disk]
  • View 1WWY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WWY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WWY, from MSDmotif at EBI
  • Fold representative 1wwy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wwy] [1wwy_A]
  • SWISS-PROT database: [O43396]
  • Domain organization of [TXNL1_HUMAN] by SWISSPFAM
  • Other resources with information on 1WWY
  • Community annotation for 1WWY at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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