1Y0S Hormone Growth Factor Receptor date Nov 16, 2004
title Crystal Structure Of Ppar Delta Complexed With Gw2331
authors I.Takada, R.T.Yu, H.E.Xu, R.X.Xu, M.H.Lambert, V.G.Montana, S.A.Kl R.M.Evans, K.Umesono
compound source
Molecule: Peroxisome Proliferator Activated Receptor Delta
Chain: A, B
Fragment: Lbd Domain (Residues 170-441)
Synonym: Ppar-Delta, Ppar-Beta, Nuclear Hormone Receptor 1, Nuci;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B21
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.356 94.523 96.492 90.00 97.92 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand 331, B7G, IOD enzyme
related structures by homologous chain: 1K7L, 1NYX
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAlteration of a single amino acid in peroxisome proliferator-activated receptor-alpha (PPAR alpha) generates a PPAR delta phenotype., Takada I, Yu RT, Xu HE, Lambert MH, Montana VG, Kliewer SA, Evans RM, Umesono K, Mol Endocrinol 2000 May;14(5):733-40. PMID:10809235
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (1y0s.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (1y0s.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 1Y0S
  • CSU: Contacts of Structural Units for 1Y0S
  • Likely Quarternary Molecular Structure file(s) for 1Y0S
  • Structure Factors (301 Kb)
  • Retrieve 1Y0S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y0S from S2C, [Save to disk]
  • Re-refined 1y0s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1Y0S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Y0S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y0S, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y0s] [1y0s_B] [1y0s_A]
  • SWISS-PROT database: [Q03181]
  • Domain organization of [PPARD_HUMAN] by SWISSPFAM
  • Domain found in 1Y0S: [HOLI ] by SMART
    • Other resources with information on 1Y0S
  • Community annotation for 1Y0S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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