1Y5D Signaling Protein date Dec 02, 2004
title Homology Model Of The Transmembrane Regions Of Ccr1 Showing Proposed Binding Site For The Chemokine Receptor Antagonist Ucb 35625
authors F.L.De Mendonca, P.C.Da Fonseca, R.M.Phillips, J.W.Saldanha, T.J.Williams, J.E.Pease
compound source
Molecule: C-C Chemokine Receptor Type 1
Chain: A
Synonym: C-C Ckr-1, Cc-Ckr-1, Ccr-1, Ccr1, Macrophage Inflammatory Protein-1 Alpha Receptor, Mip-1alpha-R, Rantes-R, Hm145, Ld78 Receptor
Organism_scientific: Homo Sapiens
Organism_common: Human
methodTheoretical Model
Primary referenceSite-directed mutagenesis of CC chemokine receptor 1 reveals the mechanism of action of UCB 35625, a small molecule chemokine receptor antagonist., de Mendonca FL, da Fonseca PC, Phillips RM, Saldanha JW, Williams TJ, Pease JE, J Biol Chem. 2005 Feb 11;280(6):4808-16. Epub 2004 Nov 17. PMID:15548526
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1Y5D
  • View 1Y5D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Y5D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 1y5d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • SWISS-PROT database: [P32246]
  • Domain organization of [CCR1_HUMAN] by SWISSPFAM
  • Other resources with information on 1Y5D
  • Community annotation for 1Y5D at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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