1YGC date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 905, CA, SO4 BindingDB enzyme
related structures by homologous chain: 1DAN, 1JBU, 1KLI
Gene
Ontology
ChainFunctionProcessComponent
H


L


Primary referenceA selective, slow binding inhibitor of factor VIIa binds to a nonstandard active site conformation and attenuates thrombus formation in vivo., Olivero AG, Eigenbrot C, Goldsmith R, Robarge K, Artis DR, Flygare J, Rawson T, Sutherlin DP, Kadkhodayan S, Beresini M, Elliott LO, DeGuzman GG, Banner DW, Ultsch M, Marzec U, Hanson SR, Refino C, Bunting S, Kirchhofer D, J Biol Chem 2005 Mar 11;280(10):9160-9. Epub 2005 Jan 4. PMID:15632123
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (1ygc.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (1ygc.pdb2.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 1YGC
  • CSU: Contacts of Structural Units for 1YGC
  • Likely Quarternary Molecular Structure file(s) for 1YGC
  • Structure Factors (296 Kb)
  • Retrieve 1YGC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YGC from S2C, [Save to disk]
  • Re-refined 1ygc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YGC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ygc_H] [1ygc] [1ygc_L]
  • SWISS-PROT database: [P08709]
  • Domains found in 1YGC: [EGF] [Tryp_SPc ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science