1YJ1 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CD, CL, DGN enzyme
related structures by homologous chain: 1OGW
Primary referenceTotal Chemical Synthesis and X-ray Crystal Structure of a Protein Diastereomer: [D-Gln 35]Ubiquitin., Bang D, Makhatadze GI, Tereshko V, Kossiakoff AA, Kent SB, Angew Chem Int Ed Engl 2005 Jun 20;44(25):3852-3856. PMID:15834850
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (1yj1.pdb1.gz) 15 Kb
  • Biological Unit Coordinates (1yj1.pdb2.gz) 15 Kb
  • Biological Unit Coordinates (1yj1.pdb3.gz) 16 Kb
  • Biological Unit Coordinates (1yj1.pdb4.gz) 41 Kb
  • Biological Unit Coordinates (1yj1.pdb5.gz) 41 Kb
  • Biological Unit Coordinates (1yj1.pdb6.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 1YJ1
  • CSU: Contacts of Structural Units for 1YJ1
  • Likely Quarternary Molecular Structure file(s) for 1YJ1
  • Structure Factors (639 Kb)
  • Retrieve 1YJ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YJ1 from S2C, [Save to disk]
  • Re-refined 1yj1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YJ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yj1] [1yj1_A] [1yj1_B] [1yj1_C]
  • SWISS-PROT database:
  • Domain found in 1YJ1: [UBQ ] by SMART

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