1YJD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	NAG	enzyme
related structures	by homologous chain: 1HH9, 1HQ4, 1MCP
Gene Ontology	Chain Function Process Component C
Primary reference	Crystal structure of a soluble CD28-Fab complex., Evans EJ, Esnouf RM, Manso-Sancho R, Gilbert RJ, James JR, Yu C, Fennelly JA, Vowles C, Hanke T, Walse B, Hunig T, Sorensen P, Stuart DI, Davis SJ, Nat Immunol 2005 Mar;6(3):271-9. Epub 2005 Feb 6. PMID:15696168

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (1yjd.pdb1.gz) 177 Kb LPC: Ligand-Protein Contacts for 1YJD CSU: Contacts of Structural Units for 1YJD Likely Quarternary Molecular Structure file(s) for 1YJD Structure Factors (140 Kb) Retrieve 1YJD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YJD from S2C, [Save to disk] Re-refined 1yjd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YJD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yjd] [1yjd_C] [1yjd_H] [1yjd_L] SWISS-PROT database: [P10747] Domains found in 1YJD: [IG_like] [IGv ] by SMART

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