1YMT	Transcription	date	Jan 21, 2005
title	Mouse Sf-1 Lbd
authors	I.N.Krylova, E.P.Sablin, J.Moore, R.X.Xu, G.M.Waitt, D.Juzumiene, J.M.Bynum, R.J.Fletterick, T.M.Willson, H.A.Ingraham
compound		source
Molecule: Steroidogenic Factor 1 Chain: A Fragment: Msf-1 Lbd (Residues 219-462) Synonym: Stf-1, Sf-1, Adrenal 4 Binding Protein, Steroid Ho Receptor Ad4bp, Fushi Tarazu Factor Homolog 1, Embryonal Lt Protein, Elp, Embryonal Long Terminal Repeat- Binding Prote Steroid Hydroxylase Positive Regulator; Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Nr5a1, Ftzf1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Nuclear Receptor 0b2 Chain: B Fragment: Mshp Peptide (Residues 17-30) Synonym: Orphan Nuclear Receptor Shp, Small Heterodimer Par Engineered: Yes		Synthetic: Yes Other_details: Mshp Peptide, Rptilyallspspr (A.A. 17-30)
symmetry	Space Group: P 41 21 2	R_factor 0.197 R_Free 0.214
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.853 73.853 117.014 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.20 Å
ligand	DR9	enzyme
note	1YMT is a representative structure
related structures	by homologous chain: 1YP0
Gene Ontology	Chain Function Process Component A
Primary reference	Structural analyses reveal phosphatidyl inositols as ligands for the NR5 orphan receptors SF-1 and LRH-1., Krylova IN, Sablin EP, Moore J, Xu RX, Waitt GM, MacKay JA, Juzumiene D, Bynum JM, Madauss K, Montana V, Lebedeva L, Suzawa M, Williams JD, Williams SP, Guy RK, Thornton JW, Fletterick RJ, Willson TM, Ingraham HA, Cell 2005 Feb 11;120(3):343-55. PMID:15707893

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (1ymt.pdb1.gz) 54 Kb LPC: Ligand-Protein Contacts for 1YMT CSU: Contacts of Structural Units for 1YMT Likely Quarternary Molecular Structure file(s) for 1YMT Structure Factors (753 Kb) Retrieve 1YMT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YMT from S2C, [Save to disk] Re-refined 1ymt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YMT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YMT

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1YMT 1YMTA 1YMTB from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YMT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ymt_A] [1ymt_B] [1ymt] SWISS-PROT database: [Q62227] [P33242] Domain organization of [NR0B2_MOUSE] [STF1_MOUSE] by SWISSPFAM Domain found in 1YMT: [HOLI ] by SMART

Other resources with information on 1YMT

Community annotation for 1YMT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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