OCA Atlas for 1YQV

1YQV

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

note

1YQV (Molecule of the Month:pdb21)

related structures

by homologous chain: 1MFA, 1NLB, 1Q72

Gene
Ontology

Chain	Function	Process	Component
Y

Primary reference

Water molecules in the antibody-antigen interface of the structure of the Fab HyHEL-5-lysozyme complex at 1.7 A resolution: comparison with results from isothermal titration calorimetry., Cohen GH, Silverton EW, Padlan EA, Dyda F, Wibbenmeyer JA, Willson RC, Davies DR, Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):628-33. Epub 2005, Apr 20. PMID:15858274

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]

Biological Unit Coordinates (1yqv.pdb1.gz) 97 Kb

CSU: Contacts of Structural Units for 1YQV

Likely Quarternary Molecular Structure file(s) for 1YQV

Structure Factors (459 Kb)

Retrieve 1YQV in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1YQV from S2C, [Save to disk]

Re-refined 1yqv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YQV in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yqv] [1yqv_H] [1yqv_L] [1yqv_Y]

SWISS-PROT database: [P00698]

Domains found in 1YQV: [IG_like] [IGv] [LYZ1 ] by SMART

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