OCA Atlas for 1YXU

1YXU

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

AMP, IMD

enzyme

related structures

by homologous chain: 1YI4, 1YXS

Gene
Ontology

Chain	Function	Process	Component
B, D, A, C

Primary reference

Crystal structures of proto-oncogene kinase Pim1: a target of aberrant somatic hypermutations in diffuse large cell lymphoma., Kumar A, Mandiyan V, Suzuki Y, Zhang C, Rice J, Tsai J, Artis DR, Ibrahim P, Bremer R, J Mol Biol 2005 Apr 22;348(1):183-93. PMID:15808862

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk]

Biological Unit Coordinates (1yxu.pdb1.gz) 49 Kb

Biological Unit Coordinates (1yxu.pdb2.gz) 48 Kb

Biological Unit Coordinates (1yxu.pdb3.gz) 47 Kb

Biological Unit Coordinates (1yxu.pdb4.gz) 48 Kb

LPC: Ligand-Protein Contacts for 1YXU

CSU: Contacts of Structural Units for 1YXU

Likely Quarternary Molecular Structure file(s) for 1YXU

Structure Factors (646 Kb)

Retrieve 1YXU in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1YXU from S2C, [Save to disk]

Re-refined 1yxu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YXU in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yxu_D] [1yxu] [1yxu_A] [1yxu_B] [1yxu_C]

SWISS-PROT database: [P11309]

Domain found in 1YXU: [S_TKc ] by SMART

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