1YZE Hydrolase date Feb 28, 2005
title Crystal Structure Of The N-Terminal Domain Of Usp7hausp.
authors V.Saridakis, Y.Sheng, F.Sarkari, M.N.Holowaty, K.Shire, T.Nguyen, R.G.Zhang, J.Liao, W.Lee, A.M.Edwards, C.H.Arrowsmith, L.Frappie
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 7
Chain: A, B, C
Synonym: Ubiquitin Thiolesterase 7, Ubiquitin-Specific Processing Protease 7, Deubiquitinating Enzyme 7, Herpesvirus Associated Ubiquitin-Specific Protease;
Ec: 3.1.2.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp7, Hausp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 32
R_factor 0.325 R_Free 0.367
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.610 102.610 45.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Hydrolase E.C.3.1.2.15 BRENDA
Primary referenceStructure of the p53 binding domain of HAUSP/USP7 bound to Epstein-Barr nuclear antigen 1 implications for EBV-mediated immortalization., Saridakis V, Sheng Y, Sarkari F, Holowaty MN, Shire K, Nguyen T, Zhang RG, Liao J, Lee W, Edwards AM, Arrowsmith CH, Frappier L, Mol Cell. 2005 Apr 1;18(1):25-36. PMID:15808506
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (1yze.pdb1.gz) 16 Kb
  • Biological Unit Coordinates (1yze.pdb2.gz) 16 Kb
  • Biological Unit Coordinates (1yze.pdb3.gz) 15 Kb
  • CSU: Contacts of Structural Units for 1YZE
  • Likely Quarternary Molecular Structure file(s) for 1YZE
  • Retrieve 1YZE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YZE from S2C, [Save to disk]
  • View 1YZE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YZE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YZE, from MSDmotif at EBI
  • Fold representative 1yze from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yze_A] [1yze_C] [1yze_B] [1yze]
  • SWISS-PROT database: [Q93009]
  • Domain organization of [UBP7_HUMAN] by SWISSPFAM
  • Domain found in 1YZE: [MATH ] by SMART
  • Other resources with information on 1YZE
  • Community annotation for 1YZE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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