1Z08 Protein Transport date Mar 01, 2005
title Gppnhp-Bound Rab21 Q53g Mutant Gtpase
authors S.Eathiraj, X.Pan, C.Ritacco, D.G.Lambright
compound source
Molecule: Ras-Related Protein Rab-21
Chain: A, B, C, D
Fragment: Gtpase Domain
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab21, Kiaa0118
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Codon Plus-Ril Cells
Expression_system_vector_type: Gst Fusion, Pgex
Expression_system_plasmid: Pgex4t1
symmetry Space Group: C 1 2 1
R_factor 0.188 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.200 77.425 107.965 90.00 89.86 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GNP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis of family-wide Rab GTPase recognition by rabenosyn-5., Eathiraj S, Pan X, Ritacco C, Lambright DG, Nature 2005 Jul 21;436(7049):415-9. PMID:16034420
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (1z08.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (1z08.pdb2.gz) 32 Kb
  • Biological Unit Coordinates (1z08.pdb3.gz) 35 Kb
  • Biological Unit Coordinates (1z08.pdb4.gz) 34 Kb
  • Biological Unit Coordinates (1z08.pdb5.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 1Z08
  • CSU: Contacts of Structural Units for 1Z08
  • Likely Quarternary Molecular Structure file(s) for 1Z08
  • Structure Factors (647 Kb)
  • Retrieve 1Z08 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z08 from S2C, [Save to disk]
  • Re-refined 1z08 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Z08 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z08
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Z08, from MSDmotif at EBI
  • Fold representative 1z08 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z08_D] [1z08_A] [1z08_B] [1z08] [1z08_C]
  • SWISS-PROT database: [Q9UL25]
  • Domain organization of [RAB21_HUMAN] by SWISSPFAM
  • Domain found in 1Z08: [RAB ] by SMART
  • Other resources with information on 1Z08
  • Community annotation for 1Z08 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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