1ZKH Gene Regulation date May 02, 2005
title Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1
authors J.A.Lukin, S.Dhe-Paganon, V.Guido, A.Lemak, G.V.Avvakumov, S.Xue, E.M.Newman, F.Mackenzie, M.Sundstrom, A.Edwards, C.H.Arrowsmith Structural Genomics Consortium (Sgc)
compound source
Molecule: Splicing Factor 3 Subunit 1
Chain: A
Fragment: Ubiquitin-Like Domain
Synonym: Spliceosome Associated Protein 114, Sap 114, Sf3a120, Sf3a1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sf3a1, Sap114
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B21 (De3) Gold Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11
methodSolution NMR
related structures by homologous chain: 1WE7
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (460 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1ZKH
  • Original NMR restraints for 1ZKH from PDB
  • Retrieve 1ZKH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZKH from S2C, [Save to disk]
  • View 1ZKH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZKH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZKH, from MSDmotif at EBI
  • Fold representative 1zkh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zkh] [1zkh_A]
  • SWISS-PROT database: [Q15459]
  • Domain organization of [SF3A1_HUMAN] by SWISSPFAM
  • Domain found in 1ZKH: [UBQ ] by SMART
  • Other resources with information on 1ZKH
  • Community annotation for 1ZKH at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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