1A07	Complex (Transferase Peptide)	date	Dec 09, 1997
title	C-Src (Sh2 Domain) Complexed With Ace-Malonyl Tyr-Glu-(N,N-D Amine)
authors	L.Shewchuk, S.Jordan
compound		source
Molecule: C-Src Tyrosine Kinase Chain: A, B Fragment: Sh2 Domain Ec: 2.7.1.112 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cellular_location: Cytoplasm Gene: Src Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_cellular_location: Cytoplasm Expression_system_plasmid: Pet11b Expression_system_gene: Src
Molecule: Ace-Malonyl Tyr-Glu-(N,N-Dipentyl Amine) Chain: C, D Engineered: Yes
symmetry	Space Group: P 21 21 21	R_factor 0.192 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.500 67.200 74.500 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	ACE, DIP, PTR BindingDB	enzyme	Transferase E.C.2.7.1.112 BRENDA
related structures	by homologous chain: 1A08, 1A1E
Primary reference	Peptide ligands of pp60(c-src) SH2 domains: a thermodynamic and structural study., Charifson PS, Shewchuk LM, Rocque W, Hummel CW, Jordan SR, Mohr C, Pacofsky GJ, Peel MR, Rodriguez M, Sternbach DD, Consler TG, Biochemistry 1997 May 27;36(21):6283-93. PMID:9174343

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (1a07.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 1A07 CSU: Contacts of Structural Units for 1A07 Likely Quarternary Molecular Structure file(s) for 1A07 Structure Factors (85 Kb) Retrieve 1A07 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1A07 from S2C, [Save to disk] Re-refined 1a07 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1A07 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1A07

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1A07, from MSDmotif at EBI Genome occurence of 1A07's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1a07a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1a07b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1a07_C] [1a07_B] [1a07_D] [1a07_A] [1a07] SWISS-PROT database: [P12931] Domain organization of [SRC_HUMAN] by SWISSPFAM Domain found in 1A07: [SH2 ] by SMART

Other resources with information on 1A07

Community annotation for 1A07 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---