1BQ9 Metal Binding Protein date Aug 22, 1998
title Rubredoxin (Formyl Methionine Mutant) From Pyrococcus Furios
authors R.Bau, D.C.Rees, D.M.Kurtz, R.A.Scott, H.Huang, M.W.W.Adams, M.K.E
compound source
Molecule: Protein (Rubredoxin)
Chain: A
Synonym: Pf Rd
Engineered: Yes
Mutation: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Variant: Fmet
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: Product Of A Synthetic Pf Rd Gene
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.029 34.474 43.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand FE, FME enzyme
related structures by homologous chain: 1BQ8
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1bq9.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 1BQ9
  • CSU: Contacts of Structural Units for 1BQ9
  • Likely Quarternary Molecular Structure file(s) for 1BQ9
  • Structure Factors (113 Kb)
  • Retrieve 1BQ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BQ9 from S2C, [Save to disk]
  • Re-refined 1bq9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BQ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BQ9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1BQ9 from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BQ9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bq9a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1bq9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bq9] [1bq9_A]
  • SWISS-PROT database: [P24297]
  • Domain organization of [RUBR_PYRFU] by SWISSPFAM
  • Other resources with information on 1BQ9
  • Community annotation for 1BQ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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