1FLM Electron Transport date Mar 10, 1999
title Dimer Of Fmn-Binding Protein From Desulfovibrio Vulgaris (Mi
authors K.Suto, K.Kawagoe, N.Shibata, K.Morimoto, Y.Higuchi, M.Kitamura, T N.Yasuoka
compound source
Molecule: Protein (Fmn-Binding Protein)
Chain: A, B
Engineered: Yes
Organism_scientific: Desulfovibrio Vulgaris Str. 'Miyazaki
Organism_taxid: 883
Strain: Miyazaki F
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_cellular_location: Cytoplasm
Expression_system_plasmid: Pmkbt-100
symmetry Space Group: P 1 21 1
length a length b length c angle alpha angle beta angle gamma
37.230 84.600 41.110 90.00 94.10 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand FMN enzyme
related structures by homologous chain: 1AXJ
A, B

Primary referenceHow do the x-ray structure and the NMR structure of FMN-binding protein differ?, Suto K, Kawagoe K, Shibata N, Morimoto Y, Higuchi Y, Kitamura M, Nakaya T, Yasuoka N, Acta Crystallogr D Biol Crystallogr 2000 Mar;56 ( Pt 3):368-71. PMID:10713530
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1flm.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 1FLM
  • CSU: Contacts of Structural Units for 1FLM
  • Likely Quarternary Molecular Structure file(s) for 1FLM
  • Structure Factors (651 Kb)
  • Retrieve 1FLM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FLM from S2C, [Save to disk]
  • Re-refined 1flm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FLM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FLM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1FLM 1FLMA 1FLMB from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FLM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1flma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1flmb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1flm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1flm_A] [1flm_B] [1flm]
  • SWISS-PROT database: [Q46604]
  • Domain organization of [FMNB_DESVM] by SWISSPFAM
  • Other resources with information on 1FLM
  • Community annotation for 1FLM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1FLM from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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