1QD8		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	3FG, AAC, BGC, CL, GHP, MLU, OMY, OMZ, RER	enzyme
Primary reference	Vancomycin binding to low-affinity ligands: delineating a minimum set of interactions necessary for high-affinity binding., Loll PJ, Kaplan J, Selinsky BS, Axelsen PH, J Med Chem 1999 Nov 4;42(22):4714-9. PMID:10579833

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk] Biological Unit Coordinates (1qd8.pdb1.gz) 6 Kb Biological Unit Coordinates (1qd8.pdb2.gz) 5 Kb LPC: Ligand-Protein Contacts for 1QD8 CSU: Contacts of Structural Units for 1QD8 Likely Quarternary Molecular Structure file(s) for 1QD8 Retrieve 1QD8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1QD8 from S2C, [Save to disk]

View 1QD8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1qd8] [1qd8_A] [1qd8_B] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---