2ALZ Transferase Dna date Aug 08, 2005
title Ternary Complex Of Hpoli With Dna And Dctp
authors D.T.Nair, R.E.Johnson, L.Prakash, S.Prakash, A.K.Aggarwal
compound source
Molecule: 5'-D(Tpgpgpgpgptpcpcpt)-3'
Chain: T
Engineered: Yes
Other_details: Dna Template
Synthetic: Yes

Molecule: 5'-D(Apgpgpapcpcp(Doc))-3'
Chain: P
Engineered: Yes
Other_details: Dna Primer

Synthetic: Yes

Molecule: Dna Polymerase Iota
Chain: A
Synonym: Rad30 Homolog B, Eta2
Ec: 2.7.7.7
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Poli, Rad30b
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Bj5464
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbj941
symmetry Space Group: P 65 2 2
R_factor 0.228 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.114 98.114 202.823 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand DCP, DOC, MG enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHuman DNA Polymerase iota Incorporates dCTP Opposite Template G via a G.C+ Hoogsteen Base Pair., Nair DT, Johnson RE, Prakash L, Prakash S, Aggarwal AK, Structure (Camb) 2005 Oct;13(10):1569-77. PMID:16216587
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (2alz.pdb1.gz) 134 Kb
  • LPC: Ligand-Protein Contacts for 2ALZ
  • CSU: Contacts of Structural Units for 2ALZ
  • Likely Quarternary Molecular Structure file(s) for 2ALZ
  • Structure Factors (147 Kb)
  • Retrieve 2ALZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ALZ from S2C, [Save to disk]
  • Re-refined 2alz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ALZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ALZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ALZ, from MSDmotif at EBI
  • Fold representative 2alz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2alz_A] [2alz_T] [2alz] [2alz_P]
  • SWISS-PROT database: [Q9UNA4]
  • Domain organization of [POLI_HUMAN] by SWISSPFAM
  • Other resources with information on 2ALZ
  • Community annotation for 2ALZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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