2AMY Isomerase date Aug 10, 2005
title X-Ray Structure Of Human Phosphomannomutase 2 (Pmm2)
authors G.E.Wesenberg, G.N.Phillips Jr., J.G.Mccoy, E.Bitto, C.A.Bingman S.T.M.Allard, Center For Eukaryotic Structural Genomics (Ces
compound source
Molecule: Phosphomannomutase 2
Chain: A
Synonym: Pmm 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hs.459855
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834 P(Rare2)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvp 16
symmetry Space Group: P 32 2 1
R_factor 0.199 R_Free 0.272
length a length b length c angle alpha angle beta angle gamma
70.622 70.622 100.150 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.09 Å
ligand EDO, GLY, MSE enzyme Isomerase E.C. BRENDA

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2amy.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2AMY
  • CSU: Contacts of Structural Units for 2AMY
  • Likely Quarternary Molecular Structure file(s) for 2AMY
  • Structure Factors (1090 Kb)
  • Retrieve 2AMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AMY from S2C, [Save to disk]
  • Re-refined 2amy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AMY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AMY, from MSDmotif at EBI
  • Fold representative 2amy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2amy_A] [2amy]
  • SWISS-PROT database: [O15305]
  • Domain organization of [PMM2_HUMAN] by SWISSPFAM
  • Other resources with information on 2AMY
  • Community annotation for 2AMY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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