2AXV Transcription date Sep 06, 2005
title Structure Of Prgx Y153c Mutant
authors K.Shi, C.K.Brown, Z.Y.Gu, B.K.Kozlowicz, G.M.Dunny, D.H.Ohlendorf C.A.Earhart
compound source
Molecule: Prgx
Chain: A, B, C, D
Engineered: Yes
Mutation: Yes
Organism_scientific: Enterococcus Faecalis
Organism_taxid: 1351
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.239 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.076 82.076 263.480 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of peptide sex pheromone receptor PrgX and PrgX/pheromone complexes and regulation of conjugation in Enterococcus faecalis., Shi K, Brown CK, Gu ZY, Kozlowicz BK, Dunny GM, Ohlendorf DH, Earhart CA, Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18596-601. Epub 2005 Dec 8. PMID:16339309
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (2axv.pdb1.gz) 199 Kb
  • CSU: Contacts of Structural Units for 2AXV
  • Likely Quarternary Molecular Structure file(s) for 2AXV
  • Structure Factors (419 Kb)
  • Retrieve 2AXV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AXV from S2C, [Save to disk]
  • Re-refined 2axv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AXV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AXV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AXV, from MSDmotif at EBI
  • Fold representative 2axv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2axv_C] [2axv_A] [2axv_D] [2axv] [2axv_B]
  • SWISS-PROT database: [Q04114]
  • Domain organization of [Q04114_ENTFA] by SWISSPFAM
  • Domain found in 2AXV: [HTH_XRE ] by SMART
  • Other resources with information on 2AXV
  • Community annotation for 2AXV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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