2B1F Biosynthetic Protein date Sep 15, 2005
title Antiparallel Four-Stranded Coiled Coil Specified By A 3-3-1 Hydrophobic Heptad Repeat
authors Y.Deng, J.Liu, Q.Zheng, D.Eliezer, N.R.Kallenbach, M.Lu
compound source
Molecule: General Control Protein Gcn4
Chain: A, B, C, D
Synonym: Amino Acid Biosynthesis Regulatory Protein
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Gcn4, Aas3, Arg9
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21plysis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppa
symmetry Space Group: P 21 21 21
R_factor 0.233 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.658 47.702 56.522 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
Primary referenceAntiparallel four-stranded coiled coil specified by a 3-3-1 hydrophobic heptad repeat., Deng Y, Liu J, Zheng Q, Eliezer D, Kallenbach NR, Lu M, Structure. 2006 Feb;14(2):247-55. PMID:16472744
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (2b1f.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 2B1F
  • Likely Quarternary Molecular Structure file(s) for 2B1F
  • Structure Factors (330 Kb)
  • Retrieve 2B1F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B1F from S2C, [Save to disk]
  • Re-refined 2b1f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2B1F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2B1F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2B1F, from MSDmotif at EBI
  • Fold representative 2b1f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b1f] [2b1f_C] [2b1f_D] [2b1f_A] [2b1f_B]
  • SWISS-PROT database: [P03069]
  • Domain organization of [GCN4_YEAST] by SWISSPFAM
  • Other resources with information on 2B1F
  • Community annotation for 2B1F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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