2BID Apoptosis date Jan 27, 1999
title Human Pro-Apoptotic Protein Bid
authors J.J.Chou, H.Li, G.S.Salvesen, J.Yuan, G.Wagner
compound source
Molecule: Protein (Bid)
Chain: A
Engineered: Yes
Other_details: After Thrombin Cleavage, Bid Has Two Extra Residues, Gly And Ser, At Its N- Terminus Before Met.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pgex-2t
Other_details: Bid Was Expressed In E. Coli With Gst Fused At The N-Terminus.
methodSolution NMR
related structures by homologous chain: 1DDB
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of BID, an intracellular amplifier of apoptotic signaling., Chou JJ, Li H, Salvesen GS, Yuan J, Wagner G, Cell 1999 Mar 5;96(5):615-24. PMID:10089877
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (786 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2BID
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 2BID in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BID from S2C, [Save to disk]
  • View 2BID in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BID
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BID, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2bida_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 2bid from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bid_A] [2bid]
  • SWISS-PROT database: [P55957]
  • Domain organization of [BID_HUMAN] by SWISSPFAM
  • Other resources with information on 2BID
  • Community annotation for 2BID at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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