2BX5 Immune System date Jul 22, 2005
title Is Fr1 The Antibody'S Achillies Heel
authors L.C.James
compound source
Molecule: Vd9 Vki Light-Chain
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
Fragment: Light-Chain Variable Domain, Residues 1-107
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 64 2 2
R_factor 0.250 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
191.928 191.928 197.439 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
Primary referenceBeta-edge interactions in a pentadecameric human antibody V kappa domain., James LC, Jones PC, McCoy A, Tennent GA, Pepys MB, Famm K, Winter G, J Mol Biol. 2007 Mar 30;367(3):603-8. Epub 2006 Nov 3. PMID:17292396
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • Biological Unit Coordinates (2bx5.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (2bx5.pdb2.gz) 21 Kb
  • Biological Unit Coordinates (2bx5.pdb3.gz) 21 Kb
  • Biological Unit Coordinates (2bx5.pdb4.gz) 21 Kb
  • Biological Unit Coordinates (2bx5.pdb5.gz) 21 Kb
  • Biological Unit Coordinates (2bx5.pdb6.gz) 21 Kb
  • Biological Unit Coordinates (2bx5.pdb7.gz) 21 Kb
  • Biological Unit Coordinates (2bx5.pdb8.gz) 19 Kb
  • Biological Unit Coordinates (2bx5.pdb9.gz) 21 Kb
  • CSU: Contacts of Structural Units for 2BX5
  • Likely Quarternary Molecular Structure file(s) for 2BX5
  • Structure Factors (833 Kb)
  • Retrieve 2BX5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BX5 from S2C, [Save to disk]
  • Re-refined 2bx5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BX5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BX5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BX5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bx5_D] [2bx5_F] [2bx5_J] [2bx5_E] [2bx5_N] [2bx5_I] [2bx5_C] [2bx5_L] [2bx5] [2bx5_K] [2bx5_G] [2bx5_O] [2bx5_M] [2bx5_B] [2bx5_H] [2bx5_A]
  • SWISS-PROT database: [Q9UL77]
  • Domain organization of [Q9UL77_HUMAN] by SWISSPFAM
  • Domain found in 2BX5: [IGv ] by SMART
  • Other resources with information on 2BX5
  • Community annotation for 2BX5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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