2BYF Lipase date Aug 01, 2005
title Nmr Solution Structure Of Phospholipase C Epsilon Ra 2 Domai
authors T.D.Bunney, R.Harris, N.L.Gandarillas, M.B.Josephs, S.M.Roe, H.F. F.Rodrigues-Lima, D.Esposito, P.Gieschik, L.H.Pearl, P.C.Drisco M.Katan
compound source
Molecule: Phospholipase C, Epsilon 1
Chain: A
Fragment: Ra2 Domain, Residues 2131-2246
Synonym: Phospholipase C Epsilon
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_plasmid: Ptriex4
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and mechanistic insights into ras association domains of phospholipase C epsilon., Bunney TD, Harris R, Gandarillas NL, Josephs MB, Roe SM, Sorli SC, Paterson HF, Rodrigues-Lima F, Esposito D, Ponting CP, Gierschik P, Pearl LH, Driscoll PC, Katan M, Mol Cell. 2006 Feb 17;21(4):495-507. PMID:16483931
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (629 Kb) [Save to disk]
  • Biological Unit Coordinates (2byf.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 2BYF
  • Original NMR restraints for 2BYF from PDB
  • Retrieve 2BYF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BYF from S2C, [Save to disk]
  • View 2BYF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BYF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BYF, from MSDmotif at EBI
  • Fold representative 2byf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2byf_A] [2byf]
  • SWISS-PROT database: [Q9P212]
  • Domain organization of [PLCE1_HUMAN] by SWISSPFAM
  • Domain found in 2BYF: [RA ] by SMART
  • Other resources with information on 2BYF
  • Community annotation for 2BYF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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