2CFH Transport date Feb 21, 2006
title Structure Of The Bet3-Tpc6b Core Of Trapp
authors D.Kummel, J.J.Muller, Y.Roske, N.Henke, U.Heinemann
compound source
Molecule: Trafficking Protein Particle Complex Subunit 3
Chain: A, B
Synonym: Bet3 Homolog
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet-Duet

Molecule: Trafficking Protein Particle Complex Subunit 6b
Chain: C, D
Synonym: Tpc6b
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet-Duet
symmetry Space Group: C 1 2 1
R_factor 0.221 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.450 69.590 144.006 90.00 91.55 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CSO, PLM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • COPII vesicle coating

  • D, C
  • COPII vesicle coating

  • Primary referenceStructure of the Bet3-Tpc6B core of TRAPP: two Tpc6 paralogs form trimeric complexes with Bet3 and Mum2., Kummel D, Muller JJ, Roske Y, Henke N, Heinemann U, J Mol Biol. 2006 Aug 4;361(1):22-32. Epub 2006 Jun 21. PMID:16828797
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (2cfh.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (2cfh.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 2CFH
  • CSU: Contacts of Structural Units for 2CFH
  • Likely Quarternary Molecular Structure file(s) for 2CFH
  • Structure Factors (408 Kb)
  • Retrieve 2CFH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CFH from S2C, [Save to disk]
  • Re-refined 2cfh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CFH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CFH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CFH, from MSDmotif at EBI
  • Fold representative 2cfh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cfh_C] [2cfh_D] [2cfh_B] [2cfh] [2cfh_A]
  • SWISS-PROT database: [Q86SZ2] [O43617]
  • Domain organization of [TPC6B_HUMAN] [TPPC3_HUMAN] by SWISSPFAM
  • Other resources with information on 2CFH
  • Community annotation for 2CFH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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