2CO0 Transcription date May 25, 2006
title Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
authors A.J.Ruthenburg, W.Wang, D.M.Graybosch, H.Li, C.D.Allis, D.J.Patel G.L.Verdine
compound source
Molecule: Wd-Repeat Protein 5
Chain: A
Fragment: Residues 20-334
Synonym: Bmp2-Induced 3-Kb Gene Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta2 Plyss

Molecule: Histone H3 Dimethyl-Lysine 4
Chain: B, D
Fragment: Histone Tail, Unp Residues 2-16
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Wd-Repeat Protein 5
Chain: C
Fragment: Residues 20-334
Synonym: Bmp2-Induced 3-Kb Gene Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta2 Plyss
symmetry Space Group: P 1 21 1
R_factor 0.190 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.916 47.030 101.768 90.00 107.01 90.00
method X-Ray Diffractionresolution 2.25 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceHistone H3 recognition and presentation by the WDR5 module of the MLL1 complex., Ruthenburg AJ, Wang W, Graybosch DM, Li H, Allis CD, Patel DJ, Verdine GL, Nat Struct Mol Biol. 2006 Aug;13(8):704-12. Epub 2006 Jul 9. PMID:16829959
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (2co0.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (2co0.pdb2.gz) 52 Kb
  • CSU: Contacts of Structural Units for 2CO0
  • Likely Quarternary Molecular Structure file(s) for 2CO0
  • Structure Factors (289 Kb)
  • Retrieve 2CO0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CO0 from S2C, [Save to disk]
  • Re-refined 2co0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CO0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CO0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CO0, from MSDmotif at EBI
  • Fold representative 2co0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2co0_A] [2co0_C] [2co0_B] [2co0_D] [2co0]
  • SWISS-PROT database: [P61964]
  • Domain organization of [WDR5_HUMAN] by SWISSPFAM
  • Domain found in 2CO0: [WD40 ] by SMART
  • Other resources with information on 2CO0
  • Community annotation for 2CO0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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