2CW6 Lyase date Jun 17, 2005
title Crystal Structure Of Human Hmg-Coa Lyase: Insights Into Catalysis And The Molecular Basis For Hydroxymethylglutaric Aciduria
authors Z.Fu, J.A.Runquist, J.F.Hunt, H.M.Miziorko, J.J.P.Kim
compound source
Molecule: Hydroxymethylglutaryl-Coa Lyase, Mitochondrial
Chain: A, B, C, D, E, F
Synonym: Hmg-Coa Lyase, Hl, 3-Hydroxy-3-Methylglutarate- Coa Lyase;
Ec: 4.1.3.4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm105
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrc99a, Ptrc-Hl1
symmetry Space Group: C 1 2 1
R_factor 0.226 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
196.990 117.080 86.830 90.00 112.50 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 3HG, MG enzyme Lyase E.C.4.1.3.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structure of human HMG-CoA lyase: Insights into catalysis and the molecular basis for hydroxymethylglutaric aciduria., Fu Z, Runquist JA, Forouhar F, Hussain M, Hunt JF, Miziorko HM, Kim JJ, J Biol Chem. 2005 Dec 5;. PMID:16330550
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (278 Kb) [Save to disk]
  • Biological Unit Coordinates (2cw6.pdb1.gz) 96 Kb
  • Biological Unit Coordinates (2cw6.pdb2.gz) 91 Kb
  • Biological Unit Coordinates (2cw6.pdb3.gz) 93 Kb
  • Biological Unit Coordinates (2cw6.pdb4.gz) 538 Kb
  • Biological Unit Coordinates (2cw6.pdb5.gz) 272 Kb
  • LPC: Ligand-Protein Contacts for 2CW6
  • CSU: Contacts of Structural Units for 2CW6
  • Likely Quarternary Molecular Structure file(s) for 2CW6
  • Structure Factors (867 Kb)
  • Retrieve 2CW6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CW6 from S2C, [Save to disk]
  • Re-refined 2cw6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CW6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CW6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CW6, from MSDmotif at EBI
  • Fold representative 2cw6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cw6_C] [2cw6_D] [2cw6_A] [2cw6_B] [2cw6_E] [2cw6] [2cw6_F]
  • SWISS-PROT database: [P35914]
  • Domain organization of [HMGCL_HUMAN] by SWISSPFAM
  • Other resources with information on 2CW6
  • Community annotation for 2CW6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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