2D1X Cell Invasion date Sep 01, 2005
title The Crystal Structure Of The Cortactin-Sh3 Domain And Amap1- Peptide Complex
authors S.Hashimoto, M.Hirose, A.Hashimoto, M.Morishige, A.Yamada, H.Hosaka, K.Akagi, E.Ogawa, C.Oneyama, T.Agatsuma, M.Okada, H.Kobayashi, H.Wada, H.Nakano, T.Ikegami, A.Nakagawa, H.Sabe
compound source
Molecule: Cortactin Isoform A
Chain: A, B, C, D
Fragment: Sh3 Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cttn(Amino Acids 490-550)
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-1

Molecule: Proline Rich Region From Development And Differentiation Enhancing Factor 1;
Chain: P, Q
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.
symmetry Space Group: C 2 2 21
R_factor 0.216 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.450 132.140 61.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceTargeting AMAP1 and cortactin binding bearing an atypical src homology 3/proline interface for prevention of breast cancer invasion and metastasis., Hashimoto S, Hirose M, Hashimoto A, Morishige M, Yamada A, Hosaka H, Akagi K, Ogawa E, Oneyama C, Agatsuma T, Okada M, Kobayashi H, Wada H, Nakano H, Ikegami T, Nakagawa A, Sabe H, Proc Natl Acad Sci U S A. 2006 May 2;103(18):7036-41. Epub 2006 Apr 24. PMID:16636290
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2d1x.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (2d1x.pdb2.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 2D1X
  • CSU: Contacts of Structural Units for 2D1X
  • Likely Quarternary Molecular Structure file(s) for 2D1X
  • Structure Factors (153 Kb)
  • Retrieve 2D1X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D1X from S2C, [Save to disk]
  • Re-refined 2d1x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2D1X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2D1X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2D1X, from MSDmotif at EBI
  • Fold representative 2d1x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d1x_Q] [2d1x_P] [2d1x_B] [2d1x] [2d1x_A] [2d1x_D] [2d1x_C]
  • SWISS-PROT database: [Q14247]
  • Domain organization of [SRC8_HUMAN] by SWISSPFAM
  • Domain found in 2D1X: [SH3 ] by SMART
  • Other resources with information on 2D1X
  • Community annotation for 2D1X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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