2D87 Structural Protein, Protein Binding date Dec 02, 2005
title Solution Structure Of The Ch Domain From Human Smoothelin Sp Isoform L2
authors T.Tomizawa, T.Kigawa, S.Koshiba, M.Inoue, S.Yokoyama, Riken Struc Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Smoothelin Splice Isoform L2
Chain: A
Fragment: Ch Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smtn
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050425-09
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (662 Kb) [Save to disk]
  • Biological Unit Coordinates (2d87.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 2D87
  • Original NMR restraints for 2D87 from PDB
  • Retrieve 2D87 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D87 from S2C, [Save to disk]
    • View 2D87 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2D87
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D87, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d87] [2d87_A]
  • SWISS-PROT database: [P53814]
  • Domain organization of [SMTN_HUMAN] by SWISSPFAM
  • Domain found in 2D87: [CH ] by SMART
    • Other resources with information on 2D87
  • Community annotation for 2D87 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science