2DDQ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand EPE, HRB enzyme
Primary referenceBispecific abs against modified protein and DNA with oxidized lipids., Akagawa M, Ito S, Toyoda K, Ishii Y, Tatsuda E, Shibata T, Yamaguchi S, Kawai Y, Ishino K, Kishi Y, Adachi T, Tsubata T, Takasaki Y, Hattori N, Matsuda T, Uchida K, Proc Natl Acad Sci U S A. 2006 Apr 18;103(16):6160-5. Epub 2006 Apr 7. PMID:16603628
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (2ddq.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 2DDQ
  • CSU: Contacts of Structural Units for 2DDQ
  • Likely Quarternary Molecular Structure file(s) for 2DDQ
  • Structure Factors (153 Kb)
  • Retrieve 2DDQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DDQ from S2C, [Save to disk]
  • Re-refined 2ddq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2DDQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ddq] [2ddq_H] [2ddq_L]
  • SWISS-PROT database:
  • Domains found in 2DDQ: [IG_like] [IGv ] by SMART

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