2DKL Signaling Protein date Apr 12, 2006
title Solution Structure Of The Uba Domain In The Human Trinucleotide Repeat Containing 6c Protein (Htnrc6c)
authors C.Zhao, T.Kigawa, M.Yoneyama, S.Koshiba, T.Harada, S.Watanabe, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Trinucleotide Repeat Containing 6c Protein
Chain: A
Fragment: Uba Domain
Synonym: Kiaa1582 Protein, Tnrc6c
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa1582
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P051216-11
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (417 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DKL
  • Retrieve 2DKL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DKL from S2C, [Save to disk]
  • View 2DKL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DKL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DKL, from MSDmotif at EBI
  • Fold representative 2dkl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dkl_A] [2dkl]
  • SWISS-PROT database: [Q9HCJ0]
  • Domain organization of [TNR6C_HUMAN] by SWISSPFAM
  • Domain found in 2DKL: [UBA ] by SMART
  • Other resources with information on 2DKL
  • Community annotation for 2DKL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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