2DM4 Lipid Transport date Apr 20, 2006
title Solution Structure Of The Second Fn3 Domain Of Human Sorlalr11
authors T.Nagashima, C.Kurosaki, M.Yoshida, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Sortilin-Related Receptor
Chain: A
Fragment: Fn3
Synonym: Sorting Protein-Related Receptor Containing Ldlr Class A Repeats, Sorla, Sorla-1, Low-Density Lipoprotein Receptor Relative With 11 Ligand-Binding Repeats, Ldlr Relative With 11 Ligand-Binding Repeats, Lr11;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sorl1
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050719-16
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (544 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DM4
  • Original NMR restraints for 2DM4 from PDB
  • Retrieve 2DM4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DM4 from S2C, [Save to disk]
  • View 2DM4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DM4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DM4, from MSDmotif at EBI
  • Fold representative 2dm4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dm4] [2dm4_A]
  • SWISS-PROT database: [Q92673]
  • Domain organization of [SORL_HUMAN] by SWISSPFAM
  • Domain found in 2DM4: [FN3 ] by SMART
  • Other resources with information on 2DM4
  • Community annotation for 2DM4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science