2DO5 Structural Genomics, Unknown Function date Apr 27, 2006
title Solution Structure Of The Sap Domain Of Human Splicing Factor 3b Subunit 2
authors S.Suzuki, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Splicing Factor 3b Subunit 2
Chain: A
Fragment: Sap Domain
Synonym: Spliceosome-Associated Protein 145, Sap 145, Sf3b150, Pre-Mrna Splicing Factor Sf3b 145 Kda Subunit;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sf3b2, Sap145
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P051212-14
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (281 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DO5
  • Original NMR restraints for 2DO5 from PDB
  • Retrieve 2DO5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DO5 from S2C, [Save to disk]
  • View 2DO5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DO5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DO5, from MSDmotif at EBI
  • Fold representative 2do5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2do5_A] [2do5]
  • SWISS-PROT database: [Q7Z3K9] [Q13435]
  • Domain organization of [Q7Z3K9_HUMAN] [SF3B2_HUMAN] by SWISSPFAM
  • Domain found in 2DO5: [SAP ] by SMART
  • Other resources with information on 2DO5
  • Community annotation for 2DO5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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