2E9S Protein Transport date Jan 26, 2007
title Human Neuronal Rab6b In Three Intermediate Forms
authors F.M.Vellieux, S.Tcherniuk, I.Garcia-Saez, F.Kozielski
compound source
Molecule: Ras-Related Protein Rab-6b
Chain: A, B, C
Fragment: Residues In Database 13-174
Synonym: Rab6b
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab6b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.199 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.808 65.185 108.672 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.78 Å
ligand GDP, MG, NO3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (2e9s.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (2e9s.pdb2.gz) 29 Kb
  • Biological Unit Coordinates (2e9s.pdb3.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2E9S
  • CSU: Contacts of Structural Units for 2E9S
  • Likely Quarternary Molecular Structure file(s) for 2E9S
  • Structure Factors (352 Kb)
  • Retrieve 2E9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E9S from S2C, [Save to disk]
  • Re-refined 2e9s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2E9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E9S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2E9S, from MSDmotif at EBI
  • Fold representative 2e9s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e9s_A] [2e9s_B] [2e9s_C] [2e9s]
  • SWISS-PROT database: [Q9NRW1]
  • Domain organization of [RAB6B_HUMAN] by SWISSPFAM
  • Domain found in 2E9S: [RAB ] by SMART
  • Other resources with information on 2E9S
  • Community annotation for 2E9S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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