2ENV Transcription date Mar 28, 2007
title Solution Structure Of The C4-Type Zinc Finger Domain From Hu Peroxisome Proliferator-Activated Receptor Delta
authors T.Nagashima, F.Hayashi, S.Yokoyama, Riken Structural Genomicsp Initiative (Rsgi)
compound source
Molecule: Peroxisome Proliferator-Activated Receptor Delta
Chain: A
Fragment: Zf-C4
Synonym: Ppar-Delta, Ppar-Beta, Nuclear Hormone Receptor 1, Nuci;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppard, Nr1c2, Pparb
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P051212-04
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (446 Kb) [Save to disk]
  • Biological Unit Coordinates (2env.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 2ENV
  • CSU: Contacts of Structural Units for 2ENV
  • Original NMR restraints for 2ENV from PDB
  • Retrieve 2ENV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ENV from S2C, [Save to disk]
  • View 2ENV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ENV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ENV, from MSDmotif at EBI
  • Fold representative 2env from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2env] [2env_A]
  • SWISS-PROT database: [Q03181]
  • Domain organization of [PPARD_HUMAN] by SWISSPFAM
  • Domain found in 2ENV: [ZnF_C4 ] by SMART
  • Other resources with information on 2ENV
  • Community annotation for 2ENV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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