2EZE Dna Binding Protein Dna date Jun 04, 1997
title Solution Structure Of A Complex Of The Second Dna Binding Domain Of Human Hmg-I(Y) Bound To Dna Dodecamer Containing The Prdii Site Of The Interferon-Beta Promoter, Nmr, 35 Structures
authors G.M.Clore, J.R.Huth, C.Bewley, A.M.Gronenborn
compound source
Molecule: Dna (5'-D(Gpgpgpapapaptptpcpcptpc)- 3');
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'-D(Gpapgpgpapaptptptpcpcpc)- 3');
Chain: C
Engineered: Yes

Synthetic: Yes

Molecule: High Mobility Group Protein Hmg-Ihmg-Y
Chain: A
Synonym: High Mobility Group Protein Hmg
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Potential
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of an HMG-I(Y)-DNA complex defines a new architectural minor groove binding motif., Huth JR, Bewley CA, Nissen MS, Evans JN, Reeves R, Gronenborn AM, Clore GM, Nat Struct Biol 1997 Aug;4(8):657-65. PMID:9253416
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (701 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2EZE
  • Original NMR restraints for 2EZE from PDB
  • Retrieve 2EZE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EZE from S2C, [Save to disk]
  • View 2EZE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EZE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2EZE, from MSDmotif at EBI
  • Genome occurence of 2EZE's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2ezea_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 2eze from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2eze] [2eze_B] [2eze_C] [2eze_A]
  • SWISS-PROT database: [P17096]
  • Domain organization of [HMGA1_HUMAN] by SWISSPFAM
  • Domain found in 2EZE: [AT_hook ] by SMART
  • Other resources with information on 2EZE
  • Community annotation for 2EZE at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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