2F1W Hydrolase date Nov 15, 2005
title Crystal Structure Of The Traf-Like Domain Of Hauspusp7
authors M.Hu, L.Gu, P.D.Jeffrey, Y.Shi
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 7
Chain: A
Fragment: N-Terminal Fragment (Residues : 53-206)
Synonym: Ubiquitin Thiolesterase 7, Ubiquitin-Specific Processing Protease 7, Deubiquitinating Enzyme 7, Herpesvirus Associated Ubiquitin-Specific Protease;
Ec: 3.1.2.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp7, Hausp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.172 52.242 63.651 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand CA enzyme Hydrolase E.C.3.1.2.15 BRENDA
Primary referenceStructural Basis of Competitive Recognition of p53 and MDM2 by HAUSP/USP7: Implications for the Regulation of the p53-MDM2 Pathway., Hu M, Gu L, Li M, Jeffrey PD, Gu W, Shi Y, PLoS Biol. 2006 Feb;4(2):e27. Epub 2006 Jan 17. PMID:16402859
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (2f1w.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 2F1W
  • CSU: Contacts of Structural Units for 2F1W
  • Likely Quarternary Molecular Structure file(s) for 2F1W
  • Retrieve 2F1W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F1W from S2C, [Save to disk]
  • View 2F1W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F1W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2F1W, from MSDmotif at EBI
  • Fold representative 2f1w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f1w] [2f1w_A]
  • SWISS-PROT database: [Q93009]
  • Domain organization of [UBP7_HUMAN] by SWISSPFAM
  • Domain found in 2F1W: [MATH ] by SMART
  • Other resources with information on 2F1W
  • Community annotation for 2F1W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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