2F2D Isomerase date Nov 16, 2005
title Solution Structure Of The Fk506-Binding Domain Of Human Fkbp38
authors M.Maestre-Martinez, F.Edlich, F.Jarczowski, M.Weiwad, G.Fischer, C.Luecke
compound source
Molecule: 38 Kda Fk-506 Binding Protein Homolog, Fkbp38
Chain: A
Fragment: Fk506-Binding Domain, Residues 35-153
Synonym: Fkbpr38, Fk506-Binding Protein 8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fkbp8, Fkbp38
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution Structure of the FK506-Binding Domain of Human FKBP38., Maestre-Martinez M, Edlich F, Jarczowski F, Weiwad M, Fischer G, Lucke C, J Biomol NMR. 2006 Mar;34(3):197-202. PMID:16604427
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (620 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2F2D
  • Retrieve 2F2D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F2D from S2C, [Save to disk]
  • View 2F2D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F2D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2F2D, from MSDmotif at EBI
  • Fold representative 2f2d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f2d] [2f2d_A]
  • SWISS-PROT database: [Q14318]
  • Domain organization of [FKBP8_HUMAN] by SWISSPFAM
  • Other resources with information on 2F2D
  • Community annotation for 2F2D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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