2F5Y Signaling Protein date Nov 28, 2005
title Crystal Structure Of The Pdz Domain From Human Rgs-3
authors E.Ugochukwu, G.Berridge, C.Johansson, C.Smee, P.Savitsky, N.Burge S.Colebrook, X.Yang, J.Elkins, D.Doyle, A.Turnbull, E.Papagrigor J.Debreczeni, G.Bunkoczi, F.Gorrec, F.Von Delft, C.Arrowsmith, M.Sundstrom, J.Weigelt, A.Edwards, Structural Genomics Consort
compound source
Molecule: Regulator Of G-Protein Signalling 3 Isoform 1
Chain: A, B
Fragment: Pdz Domain (Residues 15-103)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Bl21 (De3)
Gene: Rgs3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 2
R_factor 0.215 R_Free 0.264
length a length b length c angle alpha angle beta angle gamma
91.110 44.140 49.857 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.39 Å
ligand SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (2f5y.pdb1.gz) 15 Kb
  • Biological Unit Coordinates (2f5y.pdb2.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 2F5Y
  • CSU: Contacts of Structural Units for 2F5Y
  • Likely Quarternary Molecular Structure file(s) for 2F5Y
  • Structure Factors (120 Kb)
  • Retrieve 2F5Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F5Y from S2C, [Save to disk]
  • Re-refined 2f5y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F5Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2F5Y, from MSDmotif at EBI
  • Fold representative 2f5y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f5y_A] [2f5y_B] [2f5y]
  • SWISS-PROT database: [P49796]
  • Domain organization of [RGS3_HUMAN] by SWISSPFAM
  • Domain found in 2F5Y: [PDZ ] by SMART
  • Other resources with information on 2F5Y
  • Community annotation for 2F5Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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