2FBE Unknown Function date Dec 09, 2005
title Crystal Structure Of The Pryspry-Domain
authors C.Gruetter, C.Briand, G.Capitani, P.R.Mittl, M.G.Gruetter
compound source
Molecule: Predicted: Similar To Ret Finger Protein-Like 1
Chain: A, B, C, D
Fragment: Pryspry Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gene 19q13.4.1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pgex-6p1
symmetry Space Group: P 41 2 2
R_factor 0.227 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.220 77.220 297.299 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.52 Å
ligand MSE enzyme
Primary referenceStructure of the PRYSPRY-domain: Implications for autoinflammatory diseases., Grutter C, Briand C, Capitani G, Mittl PR, Papin S, Tschopp J, Grutter MG, FEBS Lett. 2006 Jan 9;580(1):99-106. Epub 2005 Dec 9. PMID:16364311
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (2fbe.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (2fbe.pdb2.gz) 35 Kb
  • Biological Unit Coordinates (2fbe.pdb3.gz) 35 Kb
  • Biological Unit Coordinates (2fbe.pdb4.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 2FBE
  • CSU: Contacts of Structural Units for 2FBE
  • Likely Quarternary Molecular Structure file(s) for 2FBE
  • Structure Factors (257 Kb)
  • Retrieve 2FBE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FBE from S2C, [Save to disk]
  • Re-refined 2fbe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FBE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FBE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FBE, from MSDmotif at EBI
  • Fold representative 2fbe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fbe] [2fbe_C] [2fbe_D] [2fbe_B] [2fbe_A]
  • SWISS-PROT database: [A6NLU0]
  • Domain organization of [RFPLA_HUMAN] by SWISSPFAM
  • Domains found in 2FBE: [PRY] [SPRY ] by SMART
  • Other resources with information on 2FBE
  • Community annotation for 2FBE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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