2FV8 Signaling Protein date Jan 30, 2006
title The Crystal Structure Of Rhob In The Gdp-Bound State
authors A.P.Turnbull, M.Soundararajan, C.Smee, C.Johansson, G.Schoch, F.G J.Bray, E.Papagrigoriou, F.Von Delft, J.Weigelt, A.Edwards, C.Ar M.Sundstrom, D.Doyle, Structural Genomics Consortium (Sgc)
compound source
Molecule: Rho-Related Gtp-Binding Protein Rhob
Chain: A
Fragment: Residues 4-187
Synonym: H6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rhob, Arh6, Arhb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21(De3)R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: C 1 2 1
R_factor 0.210 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.519 42.233 33.850 90.00 90.58 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand GDP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (2fv8.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 2FV8
  • CSU: Contacts of Structural Units for 2FV8
  • Likely Quarternary Molecular Structure file(s) for 2FV8
  • Structure Factors (226 Kb)
  • Retrieve 2FV8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FV8 from S2C, [Save to disk]
  • Re-refined 2fv8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FV8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FV8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FV8, from MSDmotif at EBI
  • Fold representative 2fv8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fv8] [2fv8_A]
  • SWISS-PROT database: [P62745]
  • Domain organization of [RHOB_HUMAN] by SWISSPFAM
  • Domain found in 2FV8: [RHO ] by SMART
  • Other resources with information on 2FV8
  • Community annotation for 2FV8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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