2GK9 Transferase date Mar 31, 2006
title Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type II, Ga
authors J.Uppenberg, M.Hogbom, D.Ogg, C.Arrowsmith, H.Berglund, R.Collins S.Flodin, A.Flores, S.Graslund, L.Holmberg-Schiavone, A.Edwards M.Hammarstrom, T.Kotenyova, P.Nilsson-Ehle, P.Nordlund, T.Nyman C.Persson, J.Sagemark, P.Stenmark, M.Sundstrom, A.G.Thorsell, S. Berg, J.Weigelt, B.M.Hallberg, Structural Genomics Consortium
compound source
Molecule: Phosphatidylinositol-4-Phosphate 5-Kinase, Type I
Chain: A, B, C, D
Ec: 2.7.1.68
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pip5k2c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 43
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.390 95.390 189.110 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand
enzyme Transferase E.C.2.7.1.68 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • phosphatidylinositol phospha...
  • 1-phosphatidylinositol-4-pho...
  • 1-phosphatidylinositol-5-pho...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (2gk9.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (2gk9.pdb2.gz) 85 Kb
  • CSU: Contacts of Structural Units for 2GK9
  • Likely Quarternary Molecular Structure file(s) for 2GK9
  • Structure Factors (343 Kb)
  • Retrieve 2GK9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GK9 from S2C, [Save to disk]
  • Re-refined 2gk9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GK9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GK9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GK9, from MSDmotif at EBI
  • Fold representative 2gk9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gk9_B] [2gk9_D] [2gk9_C] [2gk9] [2gk9_A]
  • SWISS-PROT database: [Q8TBX8]
  • Domain organization of [PI42C_HUMAN] by SWISSPFAM
  • Domain found in 2GK9: [PIPKc ] by SMART
  • Other resources with information on 2GK9
  • Community annotation for 2GK9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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