2GLJ Hydrolase date Apr 04, 2006
title Crystal Structure Of Aminopeptidase I From Clostridium Aceto
authors T.Min, L.Shapiro, S.K.Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Probable M18-Family Aminopeptidase 1
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X;
Ec: 3.4.11.-
Engineered: Yes
Organism_scientific: Clostridium Acetobutylicum
Organism_taxid: 1488
Gene: Apea
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.250 R_Free 0.297
length a length b length c angle alpha angle beta angle gamma
121.708 129.680 222.728 89.88 90.00 116.68
method X-Ray Diffractionresolution 3.20 Å
ligand MN, MSE enzyme Hydrolase E.C.3.4.11 BRENDA
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1852 Kb) [Save to disk]
  • Biological Unit Coordinates (2glj.pdb1.gz) 909 Kb
  • Biological Unit Coordinates (2glj.pdb2.gz) 913 Kb
  • LPC: Ligand-Protein Contacts for 2GLJ
  • CSU: Contacts of Structural Units for 2GLJ
  • Likely Quarternary Molecular Structure file(s) for 2GLJ
  • Structure Factors (2505 Kb)
  • Retrieve 2GLJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GLJ from S2C, [Save to disk]
  • Re-refined 2glj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GLJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GLJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GLJ, from MSDmotif at EBI
  • Fold representative 2glj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2glj_X] [2glj_O] [2glj_W] [2glj_C] [2glj_Q] [2glj_K] [2glj_L] [2glj_B] [2glj_U] [2glj_J] [2glj_R] [2glj_N] [2glj_D] [2glj_E] [2glj_V] [2glj_F] [2glj_P] [2glj_I] [2glj_T] [2glj_S] [2glj_M] [2glj] [2glj_H] [2glj_G] [2glj_A]
  • SWISS-PROT database: [Q97K30]
  • Domain organization of [APEA_CLOAB] by SWISSPFAM
  • Other resources with information on 2GLJ
  • Community annotation for 2GLJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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