2GNQ Transcription date Apr 10, 2006
title Structure Of Wdr5
authors J.Min, A.Schuetz, A.Allali-Hassani, P.Loppnau, M.Vedadi, J.Weigelt, M.Sundstrom, A.M.Edwards, C.H.Arrowsmith, A.Bochkarev, A.N.Plotnikov, Structural Genomics Consortium (Sgc)
compound source
Molecule: Wd-Repeat Protein 5
Chain: A
Synonym: Bmp2-Induced 3-Kb Gene Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdr5, Big3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.149 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.045 55.323 124.308 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for molecular recognition and presentation of histone H3 By WDR5., Schuetz A, Allali-Hassani A, Martin F, Loppnau P, Vedadi M, Bochkarev A, Plotnikov AN, Arrowsmith CH, Min J, EMBO J. 2006 Aug 31;. PMID:16946699
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2gnq.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 2GNQ
  • CSU: Contacts of Structural Units for 2GNQ
  • Likely Quarternary Molecular Structure file(s) for 2GNQ
  • Structure Factors (227 Kb)
  • Retrieve 2GNQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GNQ from S2C, [Save to disk]
  • Re-refined 2gnq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GNQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GNQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GNQ, from MSDmotif at EBI
  • Fold representative 2gnq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gnq_A] [2gnq]
  • SWISS-PROT database: [P61964]
  • Domain organization of [WDR5_HUMAN] by SWISSPFAM
  • Domain found in 2GNQ: [WD40 ] by SMART
  • Other resources with information on 2GNQ
  • Community annotation for 2GNQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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