2GOX Cell Adhesion Toxin date Apr 14, 2006
title Crystal Structure Of Efb-C C3d Complex
authors M.Hammel, B.V.Geisbrecht
compound source
Molecule: Complement C3
Chain: A, C
FRAGMENT: FRAGMENT OF ALPHA Chain: RESIDUES 996-1287
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-

Molecule: Fibrinogen-Binding Protein
Chain: B, D
Fragment: C-Terminal Domain: Residues 101-165
Engineered: Yes

Organism_scientific: Staphylococcus Aureus Subsp. Aureus Mu
Organism_taxid: 158878
Strain: Mu50 Atcc 700699
Gene: Efb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7hmt
symmetry Space Group: P 41
R_factor 0.181 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.939 90.939 122.242 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceA structural basis for complement inhibition by Staphylococcus aureus., Hammel M, Sfyroera G, Ricklin D, Magotti P, Lambris JD, Geisbrecht BV, Nat Immunol. 2007 Apr;8(4):430-437. Epub 2007 Mar 11. PMID:17351618
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (2gox.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (2gox.pdb2.gz) 61 Kb
  • CSU: Contacts of Structural Units for 2GOX
  • Likely Quarternary Molecular Structure file(s) for 2GOX
  • Structure Factors (752 Kb)
  • Retrieve 2GOX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GOX from S2C, [Save to disk]
  • Re-refined 2gox structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GOX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GOX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GOX, from MSDmotif at EBI
  • Fold representative 2gox from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gox_B] [2gox_C] [2gox_D] [2gox] [2gox_A]
  • SWISS-PROT database: [P01024] [P68799]
  • Domain organization of [CO3_HUMAN] [FIB_STAAM] by SWISSPFAM
  • Domain found in 2GOX: [Thiol-ester_cl ] by SMART
  • Other resources with information on 2GOX
  • Community annotation for 2GOX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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