2GQG Transferase date Apr 20, 2006
title X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To A Abl Kinase Domain
authors H.E.Klei
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Abl1
Chain: A, B
Fragment: Kinase Domain, Residues 229-500
Synonym: P150, C- Abl, Abelson Murine Leukemia Viral Oncoge 1;
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abl1, Abl, Jtk7
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Baculogold
symmetry Space Group: P 43 21 2
R_factor 0.208 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.192 105.192 111.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 1N1, GOL, PTR BindingDB enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of Dasatinib (BMS-354825) bound to activated ABL kinase domain elucidates its inhibitory activity against imatinib-resistant ABL mutants., Tokarski JS, Newitt JA, Chang CY, Cheng JD, Wittekind M, Kiefer SE, Kish K, Lee FY, Borzillerri R, Lombardo LJ, Xie D, Zhang Y, Klei HE, Cancer Res. 2006 Jun 1;66(11):5790-7. PMID:16740718
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (2gqg.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (2gqg.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 2GQG
  • CSU: Contacts of Structural Units for 2GQG
  • Likely Quarternary Molecular Structure file(s) for 2GQG
  • Structure Factors (212 Kb)
  • Retrieve 2GQG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GQG from S2C, [Save to disk]
  • Re-refined 2gqg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GQG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GQG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GQG, from MSDmotif at EBI
  • Fold representative 2gqg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gqg_B] [2gqg_A] [2gqg]
  • SWISS-PROT database: [P00519]
  • Domain organization of [ABL1_HUMAN] by SWISSPFAM
  • Domain found in 2GQG: [TyrKc ] by SMART
  • Other resources with information on 2GQG
  • Community annotation for 2GQG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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