2GV6 Hydrolase date May 02, 2006
title Crystal Structure Of Matriptase With Inhibitor Cj-730
authors W.Bode
compound source
Molecule: Suppressor Of Tumorigenicity 14
Chain: A
Synonym: Serine Protease 14, Matriptase, Membrane-Type Serine Protease 1, Mt-Sp1, Prostamin, Serine Protease Tadg- 15, Tumor-Associated Differentially-Expressed Gene 15 Protein;
Ec: 3.4.21.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: St14
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 2 2 2
R_factor 0.182 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.840 141.020 51.020 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 730 BindingDB enzyme Hydrolase E.C.3.4.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSecondary amides of sulfonylated 3-amidinophenylalanine. New potent and selective inhibitors of matriptase., Steinmetzer T, Schweinitz A, Sturzebecher A, Donnecke D, Uhland K, Schuster O, Steinmetzer P, Muller F, Friedrich R, Than ME, Bode W, Sturzebecher J, J Med Chem. 2006 Jul 13;49(14):4116-26. PMID:16821772
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2gv6.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2GV6
  • CSU: Contacts of Structural Units for 2GV6
  • Likely Quarternary Molecular Structure file(s) for 2GV6
  • Retrieve 2GV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GV6 from S2C, [Save to disk]
  • View 2GV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GV6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GV6, from MSDmotif at EBI
  • Fold representative 2gv6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gv6_A] [2gv6]
  • SWISS-PROT database: [Q9Y5Y6]
  • Domain organization of [ST14_HUMAN] by SWISSPFAM
  • Domain found in 2GV6: [Tryp_SPc ] by SMART
  • Other resources with information on 2GV6
  • Community annotation for 2GV6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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