2GV7 Hydrolase date May 02, 2006
title Structure Of Matriptase In Complex With Inhibitor Cj-672
authors W.Bode
compound source
Molecule: Suppressor Of Tumorigenicity 14
Chain: A
Synonym: Serine Protease 14, Matriptase, Membrane-Type Serine Protease 1, Mt-Sp1, Prostamin, Serine Protease Tadg- 15, Tumor-Associated Differentially-Expressed Gene 15 Protein;
Ec: 3.4.21.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: St14
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 2 2 2
R_factor 0.197 R_Free 0.238
length a length b length c angle alpha angle beta angle gamma
67.070 140.150 51.730 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 672 BindingDB enzyme Hydrolase E.C.3.4.21 BRENDA

Primary referenceSecondary amides of sulfonylated 3-amidinophenylalanine. New potent and selective inhibitors of matriptase., Steinmetzer T, Schweinitz A, Sturzebecher A, Donnecke D, Uhland K, Schuster O, Steinmetzer P, Muller F, Friedrich R, Than ME, Bode W, Sturzebecher J, J Med Chem. 2006 Jul 13;49(14):4116-26. PMID:16821772
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2gv7.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2GV7
  • CSU: Contacts of Structural Units for 2GV7
  • Likely Quarternary Molecular Structure file(s) for 2GV7
  • Retrieve 2GV7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GV7 from S2C, [Save to disk]
  • View 2GV7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GV7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GV7, from MSDmotif at EBI
  • Fold representative 2gv7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gv7] [2gv7_A]
  • SWISS-PROT database: [Q9Y5Y6]
  • Domain organization of [ST14_HUMAN] by SWISSPFAM
  • Domain found in 2GV7: [Tryp_SPc ] by SMART
  • Other resources with information on 2GV7
  • Community annotation for 2GV7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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