2GYT Protein Binding date May 10, 2006
title Solution Structure Of The Sam (Sterile Alpha Motif) Domain Of Dlc1 (Deleted In Liver Cancer 1)
authors S.Yang
compound source
Molecule: Deleted In Liver Cancer 1 Protein, Isoform 2
Chain: A
Fragment: Sterile Alpha Motif (Sam) Domain
Synonym: Rho-Type Gtpase-Activating Protein 7, Rho-Gtpase- Activating Protein 7, Dlc-1, Hp Protein, Star-Related Lipid Transfer Protein 12, Stard12, Start Domain-Containing Protein 12;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-32u-Derived
methodSolution NMR

Primary referenceThe SAM domain of the RhoGAP DLC1 binds EF1A1 to regulate cell migration., Zhong D, Zhang J, Yang S, Soh UJ, Buschdorf JP, Zhou YT, Yang D, Low BC, J Cell Sci. 2009 Feb 1;122(Pt 3):414-24. PMID:19158340
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2GYT
  • Original NMR restraints for 2GYT from PDB
  • Retrieve 2GYT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GYT from S2C, [Save to disk]
  • View 2GYT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GYT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GYT, from MSDmotif at EBI
  • Fold representative 2gyt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gyt_A] [2gyt]
  • SWISS-PROT database: [Q96QB1]
  • Domain organization of [RHG07_HUMAN] by SWISSPFAM
  • Other resources with information on 2GYT
  • Community annotation for 2GYT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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