2GYT Protein Binding date May 10, 2006
title Solution Structure Of The Sam (Sterile Alpha Motif) Domain Of Dlc1 (Deleted In Liver Cancer 1)
authors S.Yang
compound source
Molecule: Deleted In Liver Cancer 1 Protein, Isoform 2
Chain: A
Fragment: Sterile Alpha Motif (Sam) Domain
Synonym: Rho-Type Gtpase-Activating Protein 7, Rho-Gtpase- Activating Protein 7, Dlc-1, Hp Protein, Star-Related Lipid Transfer Protein 12, Stard12, Start Domain-Containing Protein 12;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-32u-Derived
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe SAM domain of the RhoGAP DLC1 binds EF1A1 to regulate cell migration., Zhong D, Zhang J, Yang S, Soh UJ, Buschdorf JP, Zhou YT, Yang D, Low BC, J Cell Sci. 2009 Feb 1;122(Pt 3):414-24. PMID:19158340
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2GYT
  • Original NMR restraints for 2GYT from PDB
  • Retrieve 2GYT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GYT from S2C, [Save to disk]
  • View 2GYT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GYT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GYT, from MSDmotif at EBI
  • Fold representative 2gyt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gyt_A] [2gyt]
  • SWISS-PROT database: [Q96QB1]
  • Domain organization of [RHG07_HUMAN] by SWISSPFAM
  • Other resources with information on 2GYT
  • Community annotation for 2GYT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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